Square-Well Molecular Dynamics is built as an easy-to-use, unique, and useful tool that allows you to analyze molecular dynamics. Square-Well Molecular Dynamics can be used to study RDF, velocity distribution, metrics and other important information. Square-Well Molecular Dynamics is written in...
The Lennard-Jones PVT System simulates a two-dimensional system of particles confined between a thermal reservoir and a piston. This computer model is designed to study the equation of state for particles interacting via a simple but realistic molecular potential that has a weak long-range...
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.
PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I.
ProtoMol is an object-oriented component based framework for molecular dynamics simulations.
Simple molecular dynamics engine written in Java. Java Molecular Dynamics Engine 1.0 License - MIT License
CARMEL is a suit of parallel codes designed to perform classical molecular dynamics simulations of atomic and ionic systemsPotentials : Lennard Jones, Yukawa, Tersoff Bond orderIntegrators : NPT, NVT, NVE CARMEL 'CARbon MEchanics Lab' 1.0 License - GNU General Public License (GPL)
Moil supports the usual set of tools for molecular modeling by classical mechanics, including energy calculations, energy minimization, molecular dynamics, and more. Moil allows for reasonably straightforward conversion of PDB files to computable datasets (coordinate and energy templates).
A user friendly front-end for molecular dynamics
LAMMPS is a classical molecular dynamics simulator designed for parallel machines. It can model atomic, polymeric, biological, metallic, or mesoscale systems using a variety of force fields and boundary conditions and is easy to modify or extend.