CodonCode Aligner Sequence Assembler 3.0.1

CodonCode Corporation in Education \ Science

User-friendly software for DNA sequence assembly and alignment. Features include end clipping, sequence assembly, alignment to reference sequences, contig editing, roundtrip editing, contig alignments, mutation detection, and base calling with Phred.


CodonCode Aligner is user-friendly software for DNA sequence assembly, alignment, contig editing, and mutation detection. In addition to features common in sequence assembly programs like end clipping, alignments to reference sequences, cDNA to genomic DNA alignment, and exporting, CodonCode Aligner offers many unique features not found in other software.

Advanced CodonCode Aligner features include:
- Assemble by name: build hundreds of contigs in seconds, based on sample names
- Accurate consensus sequences based on sequence qualities eliminate the need to edit trivial discrepancies
- Contigs of contigs: align contigs to each other with ClustalW, and go back to the underlying traces with a simple double-click
- Automate with one-step processing and scripts
- Sensitive mutation analysis with unique tools for analyzing heterozygous insertions and deletions
- Use leading tools like Clustal, MUSCLE, Phred&Phrap within CodonCode Aligner
- Get a better look at your ABI sequences with CodonCode Aligner's trace sharpening

CodonCode Aligner is easy to learn and use, yet powerful and highly customizable. It includes extensive, context-sensitive help with"how to"instructions and explanations about the algorithms used. CodonCode Aligner is widely used in phylogenetics, evolution research, biogeography, mutation detection, and other biomedical research areas.

The download is a trial version that is fully functional for 30 days. It can be converted into a full version by purchasing a license. Licenses for CodonCode Aligner are substantially less expensive than licenses for comparable software packages."Floating"licenses are available at no additional cost, and can be shared between Windows and Mac OS X.

CodonCode Aligner Sequence Assembler 3.0.1 Science software developed by CodonCode Corporation. The license of this science software is demo$, the price is 960.00, you can free download and get a free trial before you buy a registration or license. Do not use illegal warez version, crack, serial numbers, registration codes, pirate key for this science software CodonCode Aligner Sequence Assembler. If you want to get a full and unlimited version of CodonCode Aligner Sequence Assembler, you should buy from original publisher CodonCode Corporation.

Similar Software

VCAKE 1.1  Science

VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.

DNA BASER Sequence Assembler 3.5 Heracle BioSoft SRL  Science

Visit us for updated info: DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes...

RNA BASER Sequence Assembler 3.1 Heracle BioSoft SRL  Science

Easy to use aligner software for RNA sequence contig assembly, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export sequences, assemblies, code detection. Description: RNA Baser is an...

ABySS-Explorer 1.0.1 BC Cancer Agency Genome Sciences Centre  Utilities

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...

NCBI Blaster- NCBI BLAST automation tool 1.0 Heracle BioSoft SRL  Science

NCBI BLAST is a bioinformatics software program used to find regions of similarity between two or more DNA sequences. It is used to find functional and evolutionary relationships between the sequences. A NCBI BLAST search using multiple query sequences (e.g. gene predictions from a genome...

EBARDenovo 3.0.1 Build 20111207 Hsueh-Ting Chu  Misc. Graphics

EBARDenovo was specially designed to be an accessible, easy-to-use and search-based software that lets the user assemble pair-end RNA sequences. The EBARDenovo application can be easily run from the Command Line Interface found in your operating system.

SSEA aligner New Renxiang Yan  Misc. Graphics

Designed as a cross-platform Command Line-based tool, SSEA aligner can help you find out the secondary structure element alignment of a protein. Every secondary structure found in a sequence has two lines. The first one displays the annotation information and the second line is the secondary...

DNA BASER 2.7.8 CubicDesign  Science

Easy to use aligner software for DNA sequencing tool, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export sequences, assemblies, code detection. It is a price alternative for DNA contig...

LIGR Assembler 2.05  Science

LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings.

Whole-Genome Shotgun Assembler 7.0  Science

Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.

Popular Software of Education - Science

Logic Circuits 1.1 Pinkesh Creations  Science

This software is used to reduce the risk of damaging the hardware due to faulty design of the circuit. It helps the designer of the circuit, to build and test the cirucit in software, before trying it out in hardware.If anything is found wrong with the design,it can be detected and debugged at...

Simple Solver 5.4.5 SimpleSolver Logic  Science

Simple Solver is a free Windows application that can simplify computer logic systems, Boolean equations, and truth tables. The application includes six different tools:Logic Design Draw, Logic Simulation, Logic Design Auto, Boolean, Permutation and Random Number. These tools are built on years...

Atoms, Bonding and Structure 2.0 Raylec Software  Science

Unique interactive multimedia Chemistry teaching software which tests students as they learn. Topics covered include: elements, compounds, mixtures, structure of materials, bond energies and the Periodic Table. Plus interactive simulations to teach atomic structure, ionic bonding and covalent...

CHEMIX School 4.00 Arne Standnes  Science

CHEMIX School is an educational tool for learning chemistry. It is geared toward college-level chemistry, but is also appropriate for high-school students, chemists, and teachers. It is equipped with a periodic table containing history, 19 physical properties + number of stable isotopes,...

ChemMaths 14.0 ChemEng Software Design  Science

ChemMaths is a engineering,mathematical and chemistry program. Software suitable for Engineering,Chemistry/Science Professionals and educational use. Offering an extensive array of features to solve, inform and interpret engineering problems/equations/data. Saves time in solving problems,...

Orbit Xplorer 2.0  Science

Educational orbit and gravitation simulator for high school, college and beginning university physics and astronomy. Input mass, radius, coordinates and velocity components of 2 to 10 bodies manually or by dragging and dropping predefined bodies. Then watch how the orbits evolve under the mutual...

Engineering Power Tools 1.9.8 Engineering Power Tools Software  Science

ENGINEERING POWER TOOLS is powerful productivity software for professional engineers. More than 70 programs and data tables are integrated into one easy-to-use package. The programs solve a wide variety of common engineering problems quickly and easily. Eliminates wasted time, hunting for the...

Ionic Bonding 1.0 Raylec Software  Science

Chemistry teaching software which simulates the bonding of Ionic compounds on screen. Learn how Ionic compounds are formed by atoms gaining and losing electrons. Includes a reference section to support students learning with basic facts and information. Price includes full site license. Use as a...

Resistor Values 2.1 Black Knight Software Solutions  Science

Resistor Values is an electrical engineering program that will calculate the value of a 4 band resistor. Resistor Values will determine the value of a resistor based on the color bands or the reverse, it can display the color bands of a resistance value entered by the user. The trial version of...

Science Quiz 2 Bettergrades  Science

This program is designed for students aged 9 - 12 in Primary 3 - 6. There are over 2000 challenging Science quizzes and structured questions to practise on. Topics include Matter, Living and non-living things, Plants, Animals, Reproduction, Energy, Forces, Simple machines, Water cycle,...