The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
Researchers in quantitative systems biology make use of a large number of different software packages for modeling, analysis, visualization, and general data manipulation. The Systems Biology Workbench (SBW), is a software framework that allows heterogeneous application components-written in...
The Systems Biology Workbench(SBW) is a simple framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32.
Systems Biology Linker (Sybil) is a platform designed to integrate biological cellular molecular pathways and networks in SBML, BioPAX, SBPAX and (in the future) other ontology-based formats. Systems Biology Linker (Sybil) 1.0 License - GNU General Public License (GPL)
The Systems Biology Research Tool (SBRT) is both an application and an application programming interface (API) intended to facilitate the computational aspects of systems biology. The Systems Biology Research Tool 1.0 License - GNU General Public License (GPL)
Electronic Cancer System Studio, also known as ELECANS, was created as a computational model and simulation environment for cancer systems biology. ELECANS is is an accessible and useful simulation tool that's available for computational modeling of tumorigenesis in a variety of tissues. Now,...
The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.
The MCISB Project contains software solutions developed in the Manchester Centre for Integrative Systems Biology, University of Manchester. mcisb 1.0 License - Academic Free License (AFL)
exploRase was specially designed as an Open Source R-based instrument for the exploratory multivariate analysis of Systems Biology data. It provides a GUI on top of the analysis functionality provided by R and the Bioconductor project. exploRase is designed to be accessible to biologists...
GPSR is a resource for genomics, proteomics and systems biology. The aim of this project is to build comprehensive resources in the field of bioinformatics.