Simple Sequence Repeats

t2prhd 2.0 t2prhd.sourceforge.net 

t2prhd is a Perl script which generates simple diagrams that highlight relationships of sequence repeats detected by using a profile HMM in two sequences. Homology relations are identified on the basis of the phylogeny of repeats.. Freeware download of t2prhd 2.0, size 133.10 Kb.


   
 

BACContigEditor 1.0 baccontigeditor.sourceforge.net 

BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.. Freeware download of BACContigEditor 1.0, size 888.36 Kb.

SeqEntropy 1.0 seqentropy.sourceforge.net 

An assessmemt tool of sequence repeats for short read sequencing.. Freeware download of SeqEntropy 1.0, size 40.99 Kb.

BioFace 002 bioface.sourceforge.net 

BioFace is simple software for editing and analyzing DNA, RNA, and protein sequences that is written in Java using SWT and JFace as libraries. Opening GenBank, FASTA, EMBL, or simple sequence files and analizing these sequences can be done.. Freeware download of BioFace 002, size 5.93 Mb.

jt-uml 1.0 Jt-uml 

Takes in a simple text file and converts it into a UML diagram. Currently simple sequence diagrams are implemented. The diagramming space on Linux boxes isn't great and I wanted a way to quickly put together a sequence diagram.

jt-uml 1.0 License - Apache License V2.0. Freeware download of jt-uml 1.0, size 0 b.

alecleaner 1.1 VideoToolShed 

Avid has a nasty habit of being really careful with drive space, so media that is not needed will not be digitized.
As a result of this, each audio split will generate a new clip.
Now this used to be a good idea in the old days, but since drives are cheap now we prefer speed.
This is where ALE cleaner comes in.

Have a look. Free download of alecleaner 1.1, size 1.84 Mb.

MySwissAlps Screensaver 1 MySwissAlps.com 

This screensaver combines Swiss pictures with the music of the Dutch band Twarres. You will see 44 different images of the Swiss Alps in 18 minutes. The sequence repeats until you press a key. The music can be turned off if you like. . Freeware download of MySwissAlps Screensaver 1, size 7.14 Mb.

Sqirlz Morph 1.2e xiberpix 

Morph two, three or more images together. Also, warp images individually. Images A, B, C, D etc can be morphed together in several different ways - in the simple sequence A to B to C to D etc, or by blending all images simultaneously, or with "wild" (random) mixing. Try morphing all the family's faces into one unique (or gruesome) movie!. Freeware download of Sqirlz Morph 1.2e, size 1.24 Mb.

RouteWriter 2.5 Winwaed Software Technology LLC 

The RouteWriter add-in imports and exports waypoints for Microsoft MapPoint routes whilst maintaining their route order. Although MapPoint can import and export waypoints as pushpins, their order is usually re-arranged.RouteWriter exports waypoints and their matching pushpins to Excel with their waypoint distance, time, coordinate, address data,. Free download of RouteWriter 2.5, size 3.35 Mb.

SoftStep 3.2 Algorithmic Arts 

SoftStep is a modular MIDI step sequencer patterned after the modular analog step sequencers. The big ones, with lots of knobs and blinky lights. But SoftStep goes far beyond its step sequencer roots, to give you algorithmic composing tools of all kinds, including fractal, chaos, probability, and numerical based algorithms of virtually unlimited. Free download of SoftStep 3.2, size 5.86 Mb.

Weedioh Direct 1 7 Decisive Analytical Solutions 

Weedioh Direct is a Video sharing Desktop Utility for registered users of Weedioh.com. You can download the application to register as well Application Features are: Upload: Now you can convert and upload all your Videos to Weedioh.com. You can also share it with your social Circle. Weedioh Direct supports all Well-known Video File Format. The. Freeware download of Weedioh Direct 1 7, size 7.59 Mb.

Badugi Lite 1.1 Jet City Apps 

The most exciting new card game in poker! Badugi is a 4 card, lowball, triple draw poker variant, where aces are low. The object of the game is to make the lowest hand possible, using only 1 of each suit and rank. A hand of this description is called a "Badugi". Each hand starts with you receiving 4 cards, and then there is a round of. Freeware download of Badugi Lite 1.1, size 16.36 Mb.

Learning with Trashy. 1.2 Kelly Doll 

**For a few days, 50% SALE**
For kids from 3 to 7 years old.
What to learn in this app: sort, rank-numerals, counting and much more... like funny games .The child is guided by a cute talking trash (sweet English female voice).

What can you do in this app:

-Through the navigation system, you come up with a garbage. Free download of Learning with Trashy. 1.2, size 36.28 Mb.

Simon Sez Musician's Riff Master 1.21 Mystic Software 

Riff Master is a simple Ear training Tool for musicians which plays a random sequence of piano notes, then repeats periodically as you attempt to match it. You can also use RiffMaster to inspire solos and melodies. For random sequences, you specify the number of notes, the key, the scale mode, and the maximum interval size. You can also set the. Free download of Simon Sez Musician's Riff Master 1.21, size 891.29 Kb.

DNA BASER Sequence Assembler 3.5 Heracle BioSoft SRL 

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DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig. Freeware download of DNA BASER Sequence Assembler 3.5, size 1.36 Mb.

HoKAlign 0.2 Alpha sAf 

HoKAlign is a simple GUI for several free command line driven sequence alignment applications.

Currently supported programs
* ClustalW (GUI: ClustalX 2)
* ClustalW2 (GUI: ClustalX 1)
* Muscle (versions 3.6 and 3.7)
* MAFFT (supported, the source for Cygwin is stored in the subfolder scr)
* T-Coffee
*. Freeware download of HoKAlign 0.2 Alpha, size 10.18 Mb.

SeqView 1.3 Matthew Leditschke 

SeqView is a small, simple application specially designed to help you view and analyze sequence files with just a few click. You can select to view SEG, RGB, BGR sequences. So, if you needed a bioinformatics tool to help you with sequence analysis, give this tool a try and see if its capabilities are enough to satisfy your needs.. Freeware download of SeqView 1.3, size 628.74 Kb.

Genetic Sequence Library - libSeqIO 1.2.2 libseqio.sourceforge.net 

A simple fast Sequence IO library. Written to make reading and writing genetic sequences as simple as using stdio.. Freeware download of Genetic Sequence Library - libSeqIO 1.2.2, size 361.13 Kb.

SQS - the Simple Queueing System 3.1 sqs.sourceforge.net 

SQS is the Simple Queueing System that allows jobs to be run in sequence on one or more machine. The queues can be inspected, jobs can be deleted from queues even when running, and jobs can be held. The latest version as at the end of 2011 is sqs-3.1.. Freeware download of SQS - the Simple Queueing System 3.1, size 94.42 Kb.

Portable Sequence Assembly Manager 1.0 Assemblymanager 

Portable Nucleotide Sequence Assembly Manager (PAM) is a new Python program that provides a simple, user-friendly interface for the management of data files from preprocessing of raw sequence files to an assembly process.

Portable Sequence Assembly Manager 1.0 License - GNU General Public License (GPL). Freeware download of Portable Sequence Assembly Manager 1.0, size 0 b.